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#! /bin/sh
# © Copyright 2008 Randal A. Koene <randalk@netmorph.org>
#
# With design assistance from J. van Pelt & A. van Ooyen, and support
# from the Netherlands Organization for Scientific Research (NWO)
# Program Computational Life Sciences grant CLS2003 (635.100.005) and
# from the EC Marie Curie Research and Training Network (RTN)
# NEURoVERS-it 019247.
# This file is part of NETMORPH.
# NETMORPH is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# NETMORPH is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with NETMORPH. If not, see <http://www.gnu.org/licenses/>.
# install.sh
# Randal A. Koene, 20061030, 20070208
#
# Install from a versioned package of files and compile the program.
echo "© Copyright 2008 Randal A. Koene <randalk@netmorph.org>"
echo ""
echo "With design assistance from J. van Pelt & A. van Ooyen, and support"
echo "from the Netherlands Organization for Scientific Research (NWO)"
echo "Program Computational Life Sciences grant CLS2003 (635.100.005) and"
echo "from the EC Marie Curie Research and Training Network (RTN)"
echo "NEURoVERS-it 019247."
echo ""
echo "This installation script is part of NETMORPH."
echo ""
echo "NETMORPH is free software: you can redistribute it and/or modify"
echo "it under the terms of the GNU General Public License as published by"
echo "the Free Software Foundation, either version 3 of the License, or"
echo "(at your option) any later version."
echo ""
echo "NETMORPH is distributed in the hope that it will be useful,"
echo "but WITHOUT ANY WARRANTY; without even the implied warranty of"
echo "MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the"
echo "GNU General Public License for more details."
echo ""
echo "You should have received a copy of the GNU General Public License"
echo "along with NETMORPH. If not, see <http://www.gnu.org/licenses/>."
echo ""
includefig2dev=1
which sed
if [ $? -ne 0 ]; then
echo "The sed utility is not available in the execution PATH."
echo "The sed utility is distributed with all standard versions"
echo "of the Linux/Unix operating systems."
echo ""
echo "Installation cancelled."
exit
fi
which fig2dev
if [ $? -ne 0 ]; then
echo "The fig2dev utility is not available in the execution PATH."
echo "The fig2dev utility is distributed with the XFig package,"
echo "available at http://www.xfig.org."
echo ""
echo "Would you like to compile NETMORPH without fig2dev capabilities?"
printf "(Y/n): "
read fig2devspec
if [ "$fig2devspec" = "n" ]; then
echo ""
echo "Installation cancelled."
exit
fi
includefig2dev=0
fi
usercfile=0
echo "Would you like to include the use of a Unix-style resource file,"
printf ".nibrrc, .nibr2Drc (y/N): "
read rcfilespec
if [ "$rcfilespec" = "y" ]; then
echo "Use of a resource file will be compiled into NETMORPH."
usercfile=1
fi
if [ "$1" = "-nodetect" ]; then
machinespec=0
else
machinespec=`echo $MACHTYPE | grep -c "linux"`
fi
if [ $machinespec -ne 1 ]; then
if [ "$1" = "-nodetect" ]; then
echo "Installation invoked with the -nodetect option."
else
echo "Your operating system does not appear to be Linux."
fi
echo "Please select one of the following:"
echo "[1] Install for Linux."
echo "[2] Install for Linux64."
echo "[3] Install for Macintosh OSX."
echo "[4] Install for Cygwin."
echo "(Or cancel installation by entering a value other than 1-4.)"
printf "Installation choice: "
read machinespec
if [ $machinespec -ne 1 -a $machinespec -ne 2 -a $machinespec -ne 3 -a $machinespec -ne 4 ]; then
echo "Installation cancelled."
exit 1
fi
fi
if [ $machinespec -eq 1 ]; then
# Linux
cp -f Makefile.linux Makefile
else
if [ $machinespec -eq 2 ]; then
# Linux64
sed 's/MACHSTR=x86_64/#MACHSTR=x86_64/g' Makefile.linux > Makefile
else
if [ $machinespec -eq 3 ]; then
# Mac
sed 's/MACHSTR=x86_64/#MACHSTR=x86_64/g; s/^\(INCLUDES=.*\)$/\1 -I.\/mac/g' Makefile.mac > Makefile
else
if [ $machinespec -eq 4 ]; then
# Cygwin
sed 's/^\(INCLUDES=.*\)$/\1 -I.\/cygwin/g' Makefile.linux > Makefile
cd dil2al
mv -f Makefile Makefile.linux
sed 's/[-]Werror//g' Makefile.linux > Makefile
cd ..
else
echo "Installation cancelled."
exit
fi
fi
fi
fi
if [ $includefig2dev -eq 0 ]; then
sed 's/^\(OUTPUTCHOICES=.*\)$/\1 -DCOMPILE_WITHOUT_FIG2DEV/g' Makefile > Makefile.nofig2dev
mv -f Makefile.nofig2dev Makefile
fi
if [ $usercfile -ne 0 ]; then
sed 's/^\(MODELCHOICES=.*\)$/\1 -DUSE_RCFILE/g' Makefile > Makefile.rcfile
mv -f Makefile.rcfile Makefile
fi
PACKAGENAME=netmorph
PACKAGEDATE=`cat VERSION`
PACKAGE="$PACKAGENAME-$PACKAGEDATE"
CURDIR=`pwd`
mkdir -p ~/octave/common-m
mkdir -p ~/src/include
mkdir -p ~/src/geometry
mkdir -p ~/src/lib
mv -f common-m/* ~/octave/common-m/
mv -f include/* ~/src/include/
mv -f geometry/* ~/src/geometry/
if [ -f ~/src/dil2al/.netmorph-do-not-modify-this ]; then
echo "DIL2AL requested that NETMORPH not modify its directory,"
echo "retaining original ~/src/dil2al content."
else
mkdir -p ~/src/dil2al
mv -f dil2al/* ~/src/dil2al/
cd ~/src/dil2al
if [ $machinespec -eq 3 ]; then
# Mac
sed 's/MACHSTR=x86_64/#MACHSTR=x86_64/g; s/^\(INCLUDES=.*\)$/\1 -I.\/mac/g' Makefile.mac > Makefile
fi
# in case of older versions
make clean
# new dependencies
ln -s regex-gnu.c regex.c
ln -s regex-gnu.h regex.h
make regex-gnu.o
make regex.o
make BigRegex.o
make BigString.o
fi
cd ~/src/geometry
if [ $machinespec -eq 3 ]; then
# Mac
sed 's/MACHSTR=x86_64/#MACHSTR=x86_64/g; s/^\(INCLUDES=.*\)$/\1 -I.\/mac/g' Makefile.mac > Makefile
fi
# in case of older versions
make clean
# new dependencies
make
cd ~/src/include
ln -s ../geometry/Point2D.hh
ln -s ../geometry/Point3D.hh
ln -s ../geometry/Vector2D.hh
ln -s ../geometry/Vector3D.hh
cd ~/src/lib
ln -s ../geometry/libgeometry.a
cd "$CURDIR"
ln -s ~/src/dil2al/BigRegex.hh
ln -s ~/src/dil2al/BigString.hh
ln -s ~/src/dil2al/regex-gnu.h
ln -s ~/src/dil2al/BigRegex.o
ln -s ~/src/dil2al/BigString.o
ln -s ~/src/dil2al/regex-gnu.o
ln -s evaluate-partitioning.present.m epp.m
make
if [ -f nibr ]; then
echo ""
echo "Compilation appears successful."
echo "You may now run simulations with ./netmorph or ./netmorph2D."
echo "For information about simulation parameters, see any of the following sources:"
echo " ./netmorph -h"
echo " http://rak.minduploading.org:8080/caspan/Members/randalk/commands-and-parameters/"
echo " http://rak.minduploading.org:8080/caspan/Members/randalk/tutorial/"
echo ""
echo "Happy modeling! Randal A. Koene (randalk@minduploading.org)"
else
make > make.log 2>&1
grep "replicate" make.log
if [ $? -eq 0 ]; then
echo ""
echo "It appears that compilation may have run into a known problem on some platforms."
echo "Attempting a workaround with the BIGSTRING_REPLICATE_PROBLEM option."
echo ""
NIBRCONDITIONAL=-DBIGSTRING_REPLICATE_PROBLEM; export NIBRCONDITIONAL
make
if [ -f nibr ]; then
echo ""
echo "Compilation appears successful."
echo "You may now run simulations with ./netmorph or ./netmorph2D."
echo "For information about simulation parameters, see any of the following sources:"
echo " ./netmorph -h"
echo " http://rak.minduploading.org:8080/caspan/Members/randalk/commands-and-parameters/"
echo " http://rak.minduploading.org:8080/caspan/Members/randalk/tutorial/"
echo ""
echo "Happy modeling! Randal A. Koene (randalk@minduploading.org)"
else
echo ""
echo "There appears to be an unresolved compilation error."
echo "Please send bug reports to randalk@minduploading.org (Randal A. Koene)."
fi
fi
fi
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