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The directory tree for the build is as follows:
Top_level
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+-dist (a directory to hold the compiled gromacs binary tree:
| ftp://ftp.gromacs.org/pub/gromacs/gromacs-3.3.2.tar.gz)
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+-mcpp (mcpp binary distribution which can be gotten from:
http://mcpp.sourceforge.net/download.html
ReadMe.html,License.txt and GMX_installer.nsi should all reside in the top level directory
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