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2012-09-19Change numeric to numpy and update LinearAlgebra.kirka-updatesKirill Gadjello94-137/+151
2012-07-17add chroot instructions to README.mdBryan Bishop1-4/+31
2012-05-02hardcoding a commit id is a bad ideaBryan Bishop1-1/+1
2012-04-30.gitignore entries from svn global-ignoresBryan Bishop1-1/+9
2012-04-30split up a long line in build-chroot.shBryan Bishop1-1/+6
2012-04-30chroot creation script (tutorial)Bryan Bishop1-0/+169
2012-04-30two minor changes to get source running on target machinesBryan Bishop2-3/+7
2012-04-29atombase.c and samevals.c should also be ignoredBryan Bishop1-0/+2
2012-04-29even more .gitignore refinementsBryan Bishop1-5/+10
2012-04-29Revert change to HDF5_SimResults.cpp from d5eee5.Bryan Bishop1-2/+2
2012-04-29these two Makefiles get overwritten via automakeBryan Bishop1-0/+5
2012-04-29ignore more build objectsBryan Bishop1-0/+43
2012-04-29remove bends_rcsid and bonds_rcsid from sim/src/newtables.cBryan Bishop1-2/+2
2012-04-29ignore automake-generated filesBryan Bishop1-3/+29
2012-04-28direct links to the videosBryan Bishop1-3/+2
2012-04-28add nanofactory video to readmeBryan Bishop1-0/+11
2012-04-28fix url to paul rothemund dna origami imageBryan Bishop1-1/+1
2012-04-28formatting fix for table of contents in READMEBryan Bishop1-0/+6
2012-04-28initial README in top-level pathBryan Bishop1-0/+107
2012-04-28initial .gitignoreBryan Bishop1-0/+9
2010-12-16Make getExtensionButton a little more robust in FlyoutToolbar.py in UIThomas Fitzsimmons1-3/+4
2010-12-16Contributed patch: remove sponsors startup lag.Thomas Fitzsimmons1-19/+0
2010-12-16Applying contributed patches (see below)Thomas Fitzsimmons6-7/+13
2010-12-16Applying contributed patches (see below)Thomas Fitzsimmons4-6/+6
2010-12-16Applying contributed patches for various makefilesThomas Fitzsimmons6-30/+64
2010-03-05upgrade LICENSE from GPLv2 to GPLv2+ (with Mark's permission by email)Bruce Smith2-0/+40
2009-07-10rename variables named 'as' (untested), since keyword in python 2.6Bruce Smith2-6/+6
2009-05-30Introduced clear() method.Mark Sims1-3/+19
2009-05-30Fixed bug in which an invalid DnaStrand can be edited. When this happens (I f...Mark Sims1-2/+14
2009-05-30Ignorable. Refined docstrings.Mark Sims1-5/+3
2009-03-24delete pyglet, add instructions for installing itBruce Smith100-84468/+35
2009-03-18clean up imagesBruce Smith2-0/+0
2009-03-17stub for dset cache usage tracking; comments about refactoring it requires; r...Bruce Smith4-27/+140
2009-03-14add GL_MAX_ values to Graphics Card InfoBruce Smith1-1/+36
2009-03-14fix typoBruce Smith1-1/+1
2009-03-14move get_gl_info_string into its own file, graphics_card_info.pyBruce Smith3-103/+118
2009-03-14docstring changesBruce Smith1-9/+15
2009-03-13clean up comments from that refactoringBruce Smith2-77/+6
2009-03-13factored access code from client into new methods of DrawingSetCache (messy-c...Bruce Smith2-81/+233
2009-03-13split DrawingSetCache into its own file, add some docBruce Smith2-20/+49
2009-03-13comment about how to make overlap indicators work with 'reuse cached drawings...Bruce Smith1-1/+8
2009-03-13CSDL.add_drawing_func; fixes 'reuse dsets' re _f_drawchunk_realtimeBruce Smith3-10/+85
2009-03-12generalize CSDL drawing API (but not yet construction API or implementation) ...Bruce Smith3-39/+96
2009-03-12changing global display style invalidates 'reuse dsets' cacheBruce Smith2-5/+22
2009-03-12CSDLs should not have a .glname since they're never a selobjBruce Smith1-5/+8
2009-03-12make glname_color alg. better tolerate accidental color matchBruce Smith1-2/+22
2009-03-12fix non-understood bug in using ColorSorter for general highlightablesBruce Smith5-3/+25
2009-03-12coding standardsBruce Smith1-22/+21
2009-03-11renamed/improved debug_pref to reuse cached DrawingSets; revised GM.Draw APIBruce Smith9-67/+154
2009-03-11rename some methods for consistencyBruce Smith9-63/+78