src « sim - nanoengineer-theirix - theirix's remote repo for nanoengineer

Mode	Name	Size
-rwxr-xr-x	BUGS	2089	log plain
-rwxr-xr-x	CHANGENOTES.txt	343	log plain
-rwxr-xr-x	Doxyfile	39715	log plain
-rwxr-xr-x	Makefile	17286	log plain
-rw-r--r--	Makefile.am	1717	log plain
-rwxr-xr-x	Makefile.win32	797	log plain
-rwxr-xr-x	MergingParameterFiles	1081	log plain
-rwxr-xr-x	README	691	log plain
-rwxr-xr-x	VQT.py	11569	log plain
-rwxr-xr-x	allocate.c	4344	log plain
-rwxr-xr-x	allocate.h	509	log plain
-rw-r--r--	amber_patterns.c	22823	log plain
-rw-r--r--	amber_patterns.h	221	log plain
-rwxr-xr-x	batchsim.py	10828	log plain
-rwxr-xr-x	bend.py	4196	log plain
-rwxr-xr-x	bending.parms	128506	log plain
-rwxr-xr-x	branch	891	log plain
-rwxr-xr-x	cube.mmp	8180	log plain
-rwxr-xr-x	debug.h	4405	log plain
-rwxr-xr-x	distutils_compile_options.py	638	log plain
-rwxr-xr-x	dynamics.c	11185	log plain
-rwxr-xr-x	dynamics.h	453	log plain
d---------	experimental	375	log plain
-rwxr-xr-x	findpyrex.py	850	log plain
-rwxr-xr-x	globals.c	8860	log plain
-rwxr-xr-x	globals.h	2940	log plain
-rwxr-xr-x	glviewer.c	12417	log plain
-rwxr-xr-x	hashtable.c	8184	log plain
-rwxr-xr-x	hashtable.h	849	log plain
-rwxr-xr-x	interpolate.c	32149	log plain
-rwxr-xr-x	interpolate.h	1143	log plain
-rwxr-xr-x	jigs.c	18593	log plain
-rwxr-xr-x	jigs.h	2791	log plain
-rwxr-xr-x	libpython23.a.gz	37257	log plain
-rwxr-xr-x	libpython24.a.gz	38894	log plain
-rwxr-xr-x	lin-alg.c	5635	log plain
-rwxr-xr-x	lin-alg.h	3719	log plain
-rwxr-xr-x	makehelp.py	2790	log plain
-rwxr-xr-x	merge.parameters.py	1946	log plain
-rwxr-xr-x	mergemmpxyz.py	1552	log plain
-rwxr-xr-x	minimize.c	30123	log plain
-rwxr-xr-x	minimize.h	6717	log plain
-rwxr-xr-x	minstructure.c	15679	log plain
-rwxr-xr-x	minstructure.h	230	log plain
-rwxr-xr-x	newtables.c	46632	log plain
-rwxr-xr-x	newtables.h	6632	log plain
-rwxr-xr-x	onetest.py	478	log plain
-rw-r--r--	pam5_patterns.c	20989	log plain
-rw-r--r--	pam5_patterns.h	218	log plain
d---------	parameters	868	log plain
-rwxr-xr-x	part.c	98349	log plain
-rwxr-xr-x	part.h	18540	log plain
-rw-r--r--	pattern.c	16571	log plain
-rw-r--r--	pattern.h	1603	log plain
-rwxr-xr-x	potential.c	35705	log plain
-rwxr-xr-x	potential.h	1120	log plain
-rw-r--r--	printGromacsTopology.c	23601	log plain
-rw-r--r--	printGromacsTopology.h	269	log plain
-rwxr-xr-x	printers.c	10356	log plain
-rwxr-xr-x	printers.h	576	log plain
-rw-r--r--	read_amber_itp.c	5565	log plain
-rw-r--r--	read_amber_itp.h	50	log plain
-rwxr-xr-x	readers.c	19875	log plain
-rwxr-xr-x	readers.h	744	log plain
-rwxr-xr-x	readmmp.c	28524	log plain
-rwxr-xr-x	readmmp.h	210	log plain
-rwxr-xr-x	readxyz.c	1081	log plain
-rwxr-xr-x	readxyz.h	222	log plain
-rwxr-xr-x	regression.py	2644	log plain
-rwxr-xr-x	regression.sh	1970	log plain
-rwxr-xr-x	rigid-ode.c	6878	log plain
-rwxr-xr-x	rigid-ode.h	427	log plain
-rwxr-xr-x	rigid.c	1964	log plain
-rwxr-xr-x	rigid.h	498	log plain
-rwxr-xr-x	runtest.py	12027	log plain
-rwxr-xr-x	runtest.sh	6212	log plain
-rwxr-xr-x	setup.py	3803	log plain
-rwxr-xr-x	sim.pyx	21048	log plain
-rwxr-xr-x	simhelp.c	13783	log plain
-rwxr-xr-x	simulator.c	18897	log plain
-rwxr-xr-x	simulator.dev	2103	log plain
-rwxr-xr-x	simulator.h	5885	log plain
-rwxr-xr-x	stretch.parms	3878	log plain
-rwxr-xr-x	stretch.py	4176	log plain
-rw-r--r--	strtok_r.c	1988	log plain
-rwxr-xr-x	structcompare.c	9822	log plain
-rwxr-xr-x	structcompare.h	548	log plain
-rwxr-xr-x	tests.py	108583	log plain
d---------	tests	586	log plain
-rwxr-xr-x	writemovie.c	18787	log plain
-rwxr-xr-x	writemovie.h	1396	log plain