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# Copyright 2007-2008 Nanorex, Inc. See LICENSE file for details.
"""
PM_PAM5_AtomChooser.py
@author: Ninad
@version: $Id$
@copyright: 2007-2008 Nanorex, Inc. All rights reserved.
"""
from PM.PM_MolecularModelingKit import PM_MolecularModelingKit
from utilities.constants import diBALL
from utilities.GlobalPreferences import pref_MMKit_include_experimental_PAM_atoms
# Elements button list to create PAM5 atoms toolbutton group.
# Format:
# - button type
# - buttonId (element number),
# - buttonText (element symbol),
# - iconPath
# - tooltip (element name)
# - shortcut
# - column
# - row
PAM5_ATOMS_BUTTON_LIST = [
#bruce 080412 revised this
## ( "QToolButton", 200, "Ax5", "", "PAM5-Axis", None, 0, 0 ),
( "QToolButton", 208, "Gv5", "", "PAM5-Major-Groove", None, 0, 0 ),
( "QToolButton", 201, "Ss5", "", "PAM5-Sugar", None, 1, 0 ),
( "QToolButton", 202, "Pl5", "", "PAM5-Phosphate", None, 2, 0 ),
## ( "QToolButton", 203, "Sj5", "", "PAM5-Sugar-Junction", None, 1, 1 ),
## ( "QToolButton", 204, "Ae5", "", "PAM5-Axis-End", None, 1, 0 ),
## ( "QToolButton", 205, "Pe5", "", "PAM5-Phosphate-End", None, 1, 2 ),
## ( "QToolButton", 206, "Sh5", "", "PAM5-Sugar-Hydroxyl", None, 2, 1 ),
## ( "QToolButton", 207, "Hp5", "", "PAM5-Hairpin", None, 2, 2 )
]
PAM5_ATOMS_BUTTON_LIST_EXPERIMENTAL = [
#bruce 080412 added this
( "QToolButton", 210, "Ub5", "", "PAM5-Unpaired-base", None, 0, 1 ),
( "QToolButton", 211, "Ux5", "", "PAM5-Unpaired-base-x", None, 1, 1 ),
( "QToolButton", 212, "Uy5", "", "PAM5-Unpaired-base-y", None, 2, 1 ),
]
if pref_MMKit_include_experimental_PAM_atoms():
PAM5_ATOMS_BUTTON_LIST += PAM5_ATOMS_BUTTON_LIST_EXPERIMENTAL
class PM_PAM5_AtomChooser( PM_MolecularModelingKit ):
"""
The PM_PAM5_AtomChooser widget provides a PAM5 Atom Chooser,
PAM5 stands for "Five Pseudo Atom Model "
contained in its own group box, for a Property Manager dialog (or
as a sub groupbox for Atom Chooser GroupBox.)
A PM_PAM5_AtomChooser is a selection widget that displays all PAM5 atoms
supported in NE1
@see: B{elements.py}
@see: B{L{PM_MolecularModelingKit}}
@see: U{B{PAM5}<http://www.nanoengineer-1.net/mediawiki/index.php?title=PAM5>}
"""
viewerDisplay = diBALL
def __init__(self,
parentWidget,
parentPropMgr = None,
title = "",
element = "Ss5",
elementViewer = None
):
"""
Appends a PM_PAM5_AtomChooser widget to the bottom of I{parentWidget},
a Property Manager dialog. (or as a sub groupbox for Atom Chooser
GroupBox.)
@param parentWidget: The parent PM_Dialog or PM_groupBox containing this
widget.
@type parentWidget: PM_Dialog or PM_GroupBox
@param parentPropMgr: The parent Property Manager
@type parentPropMgr: PM_Dialog or None
@param title: The button title on the group box containing the
Atom Chooser.
@type title: str
@param element: The initially selected PAM5 atom. It can be either an
PAM5 atom symbol or name.
@type element: str
"""
PM_MolecularModelingKit.__init__( self,
parentWidget,
parentPropMgr,
title,
element,
elementViewer)
self._elementsButtonGroup.setButtonSize(width = 38, height = 38)
def _addGroupBoxes(self):
"""
various groupboxes present inside the PAM5 Atom chooser groupbox.
"""
self._addElementsGroupBox(self)
def getElementsButtonList(self):
"""
Return the list of buttons in the PAM5 Atom chooser.
@return: List containing information about the PAM5 atom toolbuttons
@rtype: list
"""
return PAM5_ATOMS_BUTTON_LIST
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