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The directory tree for the build is as follows:
Top_level
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+-dist (a directory to hold the compiled gromacs binary tree:
| ftp://ftp.gromacs.org/pub/gromacs/gromacs-3.3.2.tar.gz)
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+-mcpp (mcpp binary distribution which can be gotten from:
http://mcpp.sourceforge.net/download.html
ReadMe.html,License.txt and GMX_installer.nsi should all reside in the top level directory
--==compiling gromacs from original sources==--
- Untar the sources into a temporary directory.
- Make the following modifications:
* comment out the eof() function in include/futil.h and src/gmxlib/futil.c
* add #undef HAVE_UNISTD_H right before #ifdef HAVE_UNISTD_H in src/gmxlib/statutil.c,main.c
* comment out blocks and lines with SIGUSR1 references in src/kernal/md.c
- re-make the tar as gromacs-3.3.3-modified.tar.gz
- copy that tar file into C:\modified_sources
- You are now ready to run the build script located in the packaging directory
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